Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3161733_3161881_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3161733 - 3161881

Intron Length:

149

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAGGGGTC

5'SS Class:

strong_major

3'SS Sequence:

CTGCCTGTTGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

GTTTTTTTACTT

Flanking Amino Acid:

ITTKISHSVLACFVDNDLPL

Intron Amino Acid Position:

1402

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

75.5

34.4

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

74.7

0.56

0.9

68.4

37.3

Minor 5ss

32.4

-2

3.9

48.7

47.8

Minor BPS

64.2

0.53

1.5

79.54

37.3

Associated Gene:

Gene:

NCAPD3

Ensembl Gene ID:

ENSAPLG00000010868

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011386

3155542 - 3184261

28720