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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3168304_3168435_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3168304 - 3168435
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTCATTTTATGT
Flanking Amino Acid:
LPQSTCKRLIDNINCWLREF
Intron Amino Acid Position:
1059

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
73.6
30.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.5
0.75
0.8
80.5
31.5
Minor 5ss
27.7
-2.6
3
31.2
36.9
Minor BPS
45.3
-0.2
1.9
58.94
45.1

Associated Gene:

Gene:
NCAPD3
Ensembl Gene ID:
ENSAPLG00000010868
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011386
3155542 - 3184261
28720