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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3169064_3170561_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3169064 - 3170561
Intron Length:
1498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
CCTTGTTTAACT
Flanking Amino Acid:
TLLTSESQELSRYMNKAFYI
Intron Amino Acid Position:
962

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97
1.11
0.7
88.7
23.8
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
85.3
0.79
0.6
81.3
23.7
Minor 5ss
37.2
-1.4
3.3
52
45.2
Minor BPS
65.6
0.57
1.8
78.9
44

Associated Gene:

Gene:
NCAPD3
Ensembl Gene ID:
ENSAPLG00000010868
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011386
3155542 - 3184261
28720