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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3175460_3175628_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3175460 - 3175628
Intron Length:
169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGAGT
5'SS Class:
major
3'SS Sequence:
ACTTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGTTCTTAAACT
Flanking Amino Acid:
NSTSSIIGAEATSNNPLKTL
Intron Amino Acid Position:
791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
68.5
42.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
87.4
0.84
0.7
85.1
28.9
Minor 5ss
39.4
-1.2
3.3
57.4
46.9
Minor BPS
73.5
0.82
1.6
88.47
36.7

Associated Gene:

Gene:
NCAPD3
Ensembl Gene ID:
ENSAPLG00000010868
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011386
3155542 - 3184261
28720