Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3175692_3176206_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3175692 - 3176206

Intron Length:

515

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTATT

5'SS Class:

major

3'SS Sequence:

TTCTTTTTGGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATTCATTTAATT

Flanking Amino Acid:

LDSIQDLLQGSYDHAVLEAN

Intron Amino Acid Position:

770

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

1.1

84.2

33.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

85.1

0.79

0.9

83.9

31.1

Minor 5ss

44.6

-0.6

2.9

70.4

39.5

Minor BPS

66.7

0.6

1.4

80.91

34.4

Associated Gene:

Gene:

NCAPD3

Ensembl Gene ID:

ENSAPLG00000010868

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011386

3155542 - 3184261

28720