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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3176460_3176634_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3176460 - 3176634
Intron Length:
175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
CTTACATTGACG
Flanking Amino Acid:
WLYKYSHNSKISYRVFALDV
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
57.3
0.09
1.8
64.8
42.9

Associated Gene:

Gene:
NCAPD3
Ensembl Gene ID:
ENSAPLG00000010868
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011386
3155542 - 3184261
28720