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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3176761_3177357_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3176761 - 3177357
Intron Length:
597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
AATATTGTAATG
Flanking Amino Acid:
RILLQHICTKVPDKADYRTY
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71
35.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
85.7
0.8
0.8
83.6
31.5
Minor 5ss
50.9
0.03
2.4
66.9
44.7
Minor BPS
45.8
-0.4
2
50.73
38.1

Associated Gene:

Gene:
NCAPD3
Ensembl Gene ID:
ENSAPLG00000010868
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011386
3155542 - 3184261
28720