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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3177431_3178124_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3177431 - 3178124
Intron Length:
694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGTAC
5'SS Class:
major
3'SS Sequence:
TCCTTCTGCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ACCTTATTAAAA
Flanking Amino Acid:
SARNQAIKFISSVVEELKEV
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
68.5
32.4
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
75.6
0.58
0.9
71.2
33.2
Minor 5ss
30.9
-2.2
3.3
40.1
46.3
Minor BPS
51.3
0.04
1.7
59.58
40.1

Associated Gene:

Gene:
NCAPD3
Ensembl Gene ID:
ENSAPLG00000010868
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011386
3155542 - 3184261
28720