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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3179494_3179760_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3179494 - 3179760
Intron Length:
267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGCAAT
5'SS Class:
major
3'SS Sequence:
TTCTTTTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GAGAGATTAAGA
Flanking Amino Acid:
VEHEFKFSATMNINEAKYIP
Intron Amino Acid Position:
545

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
76.1
34.8
Major BPS
79
0.72
1
69
38.9
Major PPT
77.3
0.62
0.9
72.7
37.5
Minor 5ss
38
-1.3
3.1
53.2
44
Minor BPS
41.1
-0.6
2.1
47.29
42.1

Associated Gene:

Gene:
NCAPD3
Ensembl Gene ID:
ENSAPLG00000010868
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011386
3155542 - 3184261
28720