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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3181459_3181753_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3181459 - 3181753
Intron Length:
295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTGGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCATAT
U12 Branch Point Sequence:
TTGTCCAGAAGG
Flanking Amino Acid:
GLYFLLLEIPGSIASRMFHM
Intron Amino Acid Position:
405

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
61.9
0.3
1.1
58.6
38.7
Major PPT
71
0.47
1
68.7
37.2
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
48.5
-0.2
2.1
61.3
46

Associated Gene:

Gene:
NCAPD3
Ensembl Gene ID:
ENSAPLG00000010868
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011386
3155542 - 3184261
28720