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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3182482_3182971_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3182482 - 3182971
Intron Length:
490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGGCG
5'SS Class:
major
3'SS Sequence:
TCATGTCTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTCATGT
Flanking Amino Acid:
ALWRLRELPGVWVNTVWDLD
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
57.8
41.3
Major BPS
100
1.24
0.5
100
0
Major PPT
75.2
0.57
0.9
69.7
36.4
Minor 5ss
24.6
-2.9
3.3
30.6
42.7
Minor BPS
49.1
0.01
2
75.13
42.3

Associated Gene:

Gene:
NCAPD3
Ensembl Gene ID:
ENSAPLG00000010868
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011386
3155542 - 3184261
28720