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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3187638_3188329_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3187638 - 3188329
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
ACTTCCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAGAA
U12 Branch Point Sequence:
GCAACGCTAACA
Flanking Amino Acid:
ESYTGQNVKLRYFLRATVSR
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
72.6
38.9
Major BPS
49.3
-0
0.9
44.7
28.3
Major PPT
80.5
0.69
0.8
73.8
30.5
Minor 5ss
33.8
-1.8
3
45.5
42.6
Minor BPS
44.1
-0.4
2.3
54.69
43.4

Associated Gene:

Gene:
VPS26B
Ensembl Gene ID:
ENSAPLG00000027512
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042200
3183865 - 3191126
7262