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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3194534_3194647_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3194534 - 3194647
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCAACGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCTTCCTTACCT
Flanking Amino Acid:
QRLSIQPLTKEEFDFVLSLE
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
75.2
0.57
0.9
70.6
33.7
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
78.9
0.99
1.5
91.67
38.1

Associated Gene:

Gene:
THYN1
Ensembl Gene ID:
ENSAPLG00000012009
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012522
3194487 - 3198726
4240