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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3196239_3196943_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3196239 - 3196943
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGGC
5'SS Class:
major
3'SS Sequence:
TTAAATCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCTGGTTTAAAT
Flanking Amino Acid:
TFWDGVRNYQARNFLRAMKL
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
67.5
37.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
66.9
0.38
1.1
61.7
44
Minor 5ss
28.2
-2.5
3.7
40.6
46
Minor BPS
52.6
0.16
2
72.3
45

Associated Gene:

Gene:
THYN1
Ensembl Gene ID:
ENSAPLG00000012009
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012522
3194487 - 3198726
4240