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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3197013_3197489_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3197013 - 3197489
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTCCGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CCGAACTTAACC
Flanking Amino Acid:
SRLEKGVDVKFSIEDLKAQP
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
78.2
36.3
Major BPS
100
1.24
0.5
100
0
Major PPT
85
0.79
0.8
79.8
32.1
Minor 5ss
43.7
-0.7
2.9
59.5
38.8
Minor BPS
56.2
0.17
1.7
59.8
45.1

Associated Gene:

Gene:
THYN1
Ensembl Gene ID:
ENSAPLG00000012009
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012522
3194487 - 3198726
4240