Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3201227_3202030_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3201227 - 3202030

Intron Length:

804

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TCTCCCGCTCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTTAC

U12 Branch Point Sequence:

CTTACCGTACTG

Flanking Amino Acid:

TSTTAYMSIHNMCAWMIDSF

Intron Amino Acid Position:

113

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

35.2

Major BPS

61.4

0.28

33.7

Major PPT

0.56

0.9

65.5

36.1

Minor 5ss

32.6

-2

3.3

40.4

Minor BPS

45.3

-0.4

2.3

55.31

46.4

Associated Gene:

Gene:

ACAD8

Ensembl Gene ID:

ENSAPLG00000012241

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038643

3200613 - 3205887

5275

ENSAPLT00000012754

3197408 - 3205887

8480