About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3203946_3204901_F


Intron Information:

Intron Rank:
9

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
3203946 - 3204901

Intron Length:
956

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GCG|GTAGGTTGC

5'SS Class:
major

3'SS Sequence:
GCTGTCTTCTTAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TCCTCAA

U12 Branch Point Sequence:
TGAGTCTCAATG

Flanking Amino Acid:
KLFATDECFAICNQALQMHG

Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
75.9
0.61
1.1
64.4
42.8

Major BPS
73.1
0.58
1
73.8
32.3

Major PPT
71.7
0.49
0.9
69.3
36.9

Minor 5ss
39.6
-1.2
3.1
52.4
44.9

Minor BPS
49
-0.2
1.7
52.73
42.3

Associated Gene:

Gene:
ACAD8

Ensembl Gene ID:

Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

3200613 - 3205887
5275

3197408 - 3205887
8480