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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3222257_3225096_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3222257 - 3225096
Intron Length:
2840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCCATTTTAACT
Flanking Amino Acid:
GVLKYLDTVQRDQPKMVMEY
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
77.4
0.62
1
72.9
42.2
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
67.1
0.61
1.3
75.45
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012588
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037132
3207699 - 3234831
27133
ENSAPLT00000034706
3207699 - 3234757
27059
ENSAPLT00000030631
3207699 - 3234648
26950
ENSAPLT00000013179
3207699 - 3235504
27806