About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3226381_3227008_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3226381 - 3227008
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTGAA
U12 Branch Point Sequence:
CATCCCAGATGT
Flanking Amino Acid:
DEYKSDVTSYDYDAVLTEAG
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
84.3
29.3
Major BPS
54.3
0.11
1.4
49.1
46.3
Major PPT
86.5
0.82
0.7
84.1
30.8
Minor 5ss
41.2
-1
3
59
45.5
Minor BPS
40.1
-0.6
2.1
56.7
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012588
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037132
3207699 - 3234831
27133
ENSAPLT00000034706
3207699 - 3234757
27059
ENSAPLT00000013179
3207699 - 3235504
27806