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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3227698_3228100_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3227698 - 3228100
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTACGA
5'SS Class:
major
3'SS Sequence:
TTCTCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
CTGACATTAAAC
Flanking Amino Acid:
LWDVLPSLIQPFKSEFPVNM
Intron Amino Acid Position:
458

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.44
1.1
55.4
43.6
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
89
0.88
0.6
84.2
23.6
Minor 5ss
30
-2.3
3.3
39.6
45.7
Minor BPS
51.7
0.03
1.8
61.76
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012588
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034706
3207699 - 3234757
27059
ENSAPLT00000030631
3207699 - 3234648
26950
ENSAPLT00000013179
3207699 - 3235504
27806
ENSAPLT00000037132
3207699 - 3234831
27133