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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3228248_3228630_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3228248 - 3228630
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAGG
5'SS Class:
major
3'SS Sequence:
CTCTCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TTTCTCTTCTCC
Flanking Amino Acid:
SRDHVRDRAQVFVNTMYVGE
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.7
44.4
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
85
0.79
0.7
80.2
25.2
Minor 5ss
31
-2.2
3.2
39.7
45.9
Minor BPS
43.3
-0.5
3.6
71.17
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012588
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034706
3207699 - 3234757
27059
ENSAPLT00000030631
3207699 - 3234648
26950
ENSAPLT00000013179
3207699 - 3235504
27806
ENSAPLT00000037132
3207699 - 3234831
27133