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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3230915_3232925_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3230915 - 3232925
Intron Length:
2011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGGG
5'SS Class:
major
3'SS Sequence:
TGTTCTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGCTAA
U12 Branch Point Sequence:
TGTTCTCTTACA
Flanking Amino Acid:
SLEMKPDFMKSLQQVAGWSA
Intron Amino Acid Position:
586

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.2
60.9
43.8
Major BPS
46.7
-0.2
1.3
42.5
40.1
Major PPT
86.4
0.82
0.8
80.4
31.7
Minor 5ss
34.5
-1.8
2.9
41.3
45.1
Minor BPS
56
0.18
2
73.03
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012588
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037132
3207699 - 3234831
27133
ENSAPLT00000034706
3207699 - 3234757
27059
ENSAPLT00000030631
3207699 - 3234648
26950
ENSAPLT00000013179
3207699 - 3235504
27806