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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3233041_3233977_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3233041 - 3233977
Intron Length:
937

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
GTCCTGATTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
GTGTCCTGATTC
Flanking Amino Acid:
QPQDTFLKLQGWEKGVVFVN
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.8
1.15
0.7
91.8
25.6
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
72
0.5
1
61.9
43.3
Minor 5ss
29.8
-2.3
4.1
49.5
46.7
Minor BPS
53.9
0.1
1.7
64.03
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012588
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013179
3207699 - 3235504
27806
ENSAPLT00000037132
3207699 - 3234831
27133
ENSAPLT00000034706
3207699 - 3234757
27059
ENSAPLT00000030631
3207699 - 3234648
26950