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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3234095_3234561_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3234095 - 3234561
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTGTATGAAGG
Flanking Amino Acid:
GPWLQKGNNEIVIFEERTAG
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
82.4
0.73
0.7
76.8
25.2
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
45.2
-0.5
2.1
56.73
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012588
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037132
3207699 - 3234831
27133
ENSAPLT00000034706
3207699 - 3234757
27059
ENSAPLT00000030631
3207699 - 3234648
26950
ENSAPLT00000013179
3207699 - 3235504
27806