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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3245742_3248473_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3245742 - 3248473
Intron Length:
2732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTGCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAC
U12 Branch Point Sequence:
CCCCTTCCAACC
Flanking Amino Acid:
NTYSLELFEEMRSTRKVSVW
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
61.9
0.3
1.2
70.7
33.5
Major PPT
79.1
0.65
0.8
72.9
32
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
41.3
-0.6
1.7
43.52
38.4

Associated Gene:

Gene:
B3GAT1
Ensembl Gene ID:
ENSAPLG00000008480
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008817
3237166 - 3271296
34131