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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3251761_3251898_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3251761 - 3251898
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCACTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GGGGTTTTCACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.8
39.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.7
0.65
1
78.3
35.2
Minor 5ss
34.7
-1.7
3.2
46.8
42.3
Minor BPS
47
-0.1
1.8
60.14
43.9

Associated Gene:

Gene:
B3GAT1
Ensembl Gene ID:
ENSAPLG00000008480
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008817
3237166 - 3271296
34131