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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3252035_3270965_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3252035 - 3270965
Intron Length:
18931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GCCTGCTCACCG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.1
76.2
39.9
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
82.1
0.72
0.9
76.3
37.7
Minor 5ss
44.3
-0.6
2.9
61.9
42.7
Minor BPS
41.7
-0.7
2.2
43.65
47.8

Associated Gene:

Gene:
B3GAT1
Ensembl Gene ID:
ENSAPLG00000008480
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008817
3237166 - 3271296
34131