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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3388023_3388756_F

Intron Information:

Intron Rank:
142135
Intron Class:
major
Intron Phase:
Intron Coordinates:
3388023 - 3388756
Intron Length:
734

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAATAA
5'SS Class:
major
3'SS Sequence:
CTTGTTTAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
TCTTGTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
0.9
72.4
27.5
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
68.5
0.42
1
63.4
42
Minor 5ss
31.2
-2.2
3.1
37.8
47
Minor BPS
72.6
0.79
1.7
87.23
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026533
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034026
3380508 - 3388866
8359