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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_338957_339639_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
338957 - 339639
Intron Length:
683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
ACTTGCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TGTTTAAAAACA
Flanking Amino Acid:
MNQLSMEYTDGDNCLHSETS
Intron Amino Acid Position:
1208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
80
0.68
0.9
73.2
36.5
Minor 5ss
36
-1.6
3
47.1
42.6
Minor BPS
46.8
-0.2
2.1
66.02
40

Associated Gene:

Gene:
CDON
Ensembl Gene ID:
ENSAPLG00000014642
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029285
338790 - 373993
35204
ENSAPLT00000018082
338790 - 373993
35204
ENSAPLT00000015293
338790 - 373993
35204