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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3394201_3397203_R

Intron Information:

Intron Rank:
150980
Intron Class:
major
Intron Phase:
Intron Coordinates:
3394201 - 3397203
Intron Length:
3003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TACTGTATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
AATTTCTTACTG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
76.4
0.59
0.9
69.2
40.3
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
59
0.14
1.7
62.27
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028731
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046365
3393317 - 3397304
3988