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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_347591_348712_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
347591 - 348712
Intron Length:
1122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTTAT
5'SS Class:
major
3'SS Sequence:
GGTCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ACTGCCGTAATA
Flanking Amino Acid:
WKNRQQNTMQKYDPPGYLYQ
Intron Amino Acid Position:
1005

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
73.8
33
Major BPS
80
0.75
1
78.6
31
Major PPT
82.4
0.73
0.9
76.5
37.5
Minor 5ss
37.7
-1.4
3
45.6
43.6
Minor BPS
52.2
0.06
2.1
64.95
42.3

Associated Gene:

Gene:
CDON
Ensembl Gene ID:
ENSAPLG00000014642
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029285
338790 - 373993
35204
ENSAPLT00000018082
338790 - 373993
35204
ENSAPLT00000015293
338790 - 373993
35204