About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3478978_3482039_F

Intron Information:

Intron Rank:
130452
Intron Class:
major
Intron Phase:
Intron Coordinates:
3478978 - 3482039
Intron Length:
3062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
TTCTTCCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGTTTCTCAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
71.7
38.4
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
86.3
0.82
0.7
80.7
24.7
Minor 5ss
40.6
-1
3
55.4
36.8
Minor BPS
74.9
0.86
1.5
88.97
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020171
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044707
3478914 - 3492252
13339