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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3487695_3488215_F

Intron Information:

Intron Rank:
130454
Intron Class:
major
Intron Phase:
Intron Coordinates:
3487695 - 3488215
Intron Length:
521

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCTTT
5'SS Class:
major
3'SS Sequence:
TGTGTTTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCATCAA
U12 Branch Point Sequence:
TTTGCCCCAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
74.8
38.1
Major BPS
49.5
-0
1.3
53.9
41.5
Major PPT
74.6
0.55
0.9
74.6
40
Minor 5ss
43.9
-0.7
3.1
56.2
48
Minor BPS
48.7
-0
2.2
76.94
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020171
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044707
3478914 - 3492252
13339