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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3488353_3488841_F

Intron Information:

Intron Rank:
130455
Intron Class:
major
Intron Phase:
Intron Coordinates:
3488353 - 3488841
Intron Length:
489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
73.2
37.5
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
31.6
-2.1
3.4
43.4
44.3
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020171
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044707
3478914 - 3492252
13339