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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_348941_350423_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
348941 - 350423
Intron Length:
1483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCACCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
TATTCTTTCACC
Flanking Amino Acid:
YSNVMICETKVKRMPGASEY
Intron Amino Acid Position:
929

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
71.4
40.3
Major BPS
77.7
0.69
1
81
30.2
Major PPT
75.6
0.58
0.8
70.2
35.5
Minor 5ss
34.3
-1.8
2.8
40.4
45.5
Minor BPS
70.2
0.62
1.7
79.29
36

Associated Gene:

Gene:
CDON
Ensembl Gene ID:
ENSAPLG00000014642
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029285
338790 - 373993
35204
ENSAPLT00000018082
338790 - 373993
35204
ENSAPLT00000015293
338790 - 373993
35204