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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3490135_3491486_F

Intron Information:

Intron Rank:
130448
Intron Class:
major
Intron Phase:
Intron Coordinates:
3490135 - 3491486
Intron Length:
1352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
TTTCCTGTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
CCCTCTACAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
81.2
0.7
0.8
77
31.6
Minor 5ss
38.3
-1.3
2.8
51.5
39
Minor BPS
44.6
-0.3
1.9
57.81
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020171
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033364
3488955 - 3492252
3298