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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3493259_3493701_F

Intron Information:

Intron Rank:
144031
Intron Class:
major
Intron Phase:
Intron Coordinates:
3493259 - 3493701
Intron Length:
443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
TTTCCAATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CCTTTTTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
70.3
40.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
81.9
0.72
0.8
78.7
33.3
Minor 5ss
41
-1
3
59.3
39
Minor BPS
51.6
0.13
1.7
67.62
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027634
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035221
3492273 - 3494554
2282