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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3531634_3532960_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3531634 - 3532960
Intron Length:
1327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
GTCCTTGATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
GTGTCCTTGATT
Flanking Amino Acid:
RSLEQQLQEHRLHQKRLFLH
Intron Amino Acid Position:
729

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
81.6
30
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
71.8
0.49
1
69.2
40.9
Minor 5ss
34.7
-1.7
2.9
44.4
43.1
Minor BPS
76.8
0.92
1.1
83.73
37.5

Associated Gene:

Gene:
SIK2
Ensembl Gene ID:
ENSAPLG00000013801
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035639
3531036 - 3576161
45126
ENSAPLT00000014415
3531036 - 3575854
44819
ENSAPLT00000040561
3531036 - 3576161
45126