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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3533053_3534942_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3533053 - 3534942
Intron Length:
1890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGAAA
5'SS Class:
major
3'SS Sequence:
ACTTTTCTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TAAAATTTAAAA
Flanking Amino Acid:
LQDLVNSPPQKPTLLSKAQN
Intron Amino Acid Position:
703

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.2
66
41.4
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
82
0.72
0.8
77
30.9
Minor 5ss
36
-1.6
3.3
48.2
47.5
Minor BPS
51.2
0.03
1.6
61.02
38

Associated Gene:

Gene:
SIK2
Ensembl Gene ID:
ENSAPLG00000013801
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035639
3531036 - 3576161
45126