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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3536400_3539195_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3536400 - 3539195
Intron Length:
2796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATAAA
5'SS Class:
major
3'SS Sequence:
TCGTGACATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TCCTCGTGACAT
Flanking Amino Acid:
MEEERVETPKVNGCLLDPVP
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
76.7
33.8
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
63.2
0.3
1
59.8
41
Minor 5ss
33.3
-1.9
3
41.9
44.8
Minor BPS
42.4
-0.5
2.4
61.48
48

Associated Gene:

Gene:
SIK2
Ensembl Gene ID:
ENSAPLG00000013801
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014415
3531036 - 3575854
44819
ENSAPLT00000040561
3531036 - 3576161
45126
ENSAPLT00000035639
3531036 - 3576161
45126