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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3539361_3540969_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3539361 - 3540969
Intron Length:
1609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATATTT
Flanking Amino Acid:
STIAEQTVAKAQTVVPPVNL
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.2
31.9
Major BPS
100
1.24
0.5
100
0
Major PPT
80.4
0.68
0.8
78.5
34.3
Minor 5ss
33.9
-1.8
3.3
47.6
48
Minor BPS
61
0.42
1.8
84.33
36.6

Associated Gene:

Gene:
SIK2
Ensembl Gene ID:
ENSAPLG00000013801
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040561
3531036 - 3576161
45126
ENSAPLT00000035639
3531036 - 3576161
45126
ENSAPLT00000014415
3531036 - 3575854
44819