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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3542212_3544230_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3542212 - 3544230
Intron Length:
2019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAATT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTGAA
U12 Branch Point Sequence:
TTCTTCCCAACA
Flanking Amino Acid:
RFRIPYFMSEECEHLIRRML
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.1
84.6
33.3
Major BPS
49.2
-0
1.3
40.8
41.4
Major PPT
78.2
0.63
0.8
74.2
29.6
Minor 5ss
45
-0.5
3
66.7
44.2
Minor BPS
55.6
0.17
1.9
71.95
40.1

Associated Gene:

Gene:
SIK2
Ensembl Gene ID:
ENSAPLG00000013801
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035639
3531036 - 3576161
45126
ENSAPLT00000014415
3531036 - 3575854
44819
ENSAPLT00000040561
3531036 - 3576161
45126