Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3557104_3575683_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3557104 - 3575683

Intron Length:

18580

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCGGA

5'SS Class:

strong_major

3'SS Sequence:

TTTATTTTAACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAC

U12 Branch Point Sequence:

TTTATTTTAACA

Flanking Amino Acid:

AGEAPYHAQRDYLASHGRLS

Intron Amino Acid Position:

160

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

68.5

38.7

Major BPS

72.4

0.56

79.3

29.5

Major PPT

84.3

0.77

0.9

81.1

35.2

Minor 5ss

30.3

-2.3

3.3

46.8

Minor BPS

77.6

0.86

1.1

83.48

30.3

Associated Gene:

Gene:

SIK2

Ensembl Gene ID:

ENSAPLG00000013801

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040561

3531036 - 3576161

45126

ENSAPLT00000035639

3531036 - 3576161

45126