Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_356298_357978_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

356298 - 357978

Intron Length:

1681

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGTATA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTATTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

GCTCTTTTAACT

Flanking Amino Acid:

VLPDLSRHSGVPEAPDRPTI

Intron Amino Acid Position:

601

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.1

0.92

0.9

87.1

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

90.7

0.92

0.7

89.4

25.6

Minor 5ss

37.9

-1.4

3.1

50.4

46.1

Minor BPS

69.2

0.68

1.2

77.46

39.1

Associated Gene:

Gene:

CDON

Ensembl Gene ID:

ENSAPLG00000014642

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029285

338790 - 373993

35204