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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_356303_357974_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
356303 - 357974
Intron Length:
1672

Sequence Information:

Terminal Dinucleotides:
GT-AT
5'SS Sequence:
TAG|GTATATGGG
5'SS Class:
major
3'SS Sequence:
CTGAATTTCTTAT|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GCTCTTTTAACT
Flanking Amino Acid:
LPDLSRHSGGSSVPEAPDRP
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
62.1
42.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
39.4
-0.6
3.1
57.8
42.7
Minor 5ss
37.5
-1.4
3.2
49.2
47.1
Minor BPS
69.2
0.68
1.2
77.46
39.1

Associated Gene:

Gene:
CDON
Ensembl Gene ID:
ENSAPLG00000014642
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015293
338790 - 373993
35204