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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3585448_3585808_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3585448 - 3585808
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
CGCTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
GCAATATTAACT
Flanking Amino Acid:
TTAPIENSPRDVTTEPFNVL
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.2
78.4
32.4
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
81
0.7
0.8
72.4
37.8
Minor 5ss
35.9
-1.6
2.7
43.9
43.8
Minor BPS
54.2
0.21
1.7
67.45
42.7

Associated Gene:

Gene:
LAYN
Ensembl Gene ID:
ENSAPLG00000013654
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014224
3583546 - 3590025
6480