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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_359420_361247_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
359420 - 361247
Intron Length:
1828

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCCATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TGATGTTGAACT
Flanking Amino Acid:
INAYFVKYRKLDDSVSAAGS
Intron Amino Acid Position:
619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
72.5
0.51
0.9
66.4
34.7
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
55.4
0.25
1.9
74.56
41.9

Associated Gene:

Gene:
CDON
Ensembl Gene ID:
ENSAPLG00000014642
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029285
338790 - 373993
35204
ENSAPLT00000018082
338790 - 373993
35204
ENSAPLT00000015293
338790 - 373993
35204