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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3611234_3611409_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3611234 - 3611409
Intron Length:
176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
CAGTTTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TTGTGCAGAACT
Flanking Amino Acid:
LWVDPFEVCCRYGEKNRPFT
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
80.2
30.7
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
78.4
0.64
0.9
69.5
41.3
Minor 5ss
34.1
-1.8
2.8
40.8
45.4
Minor BPS
50.8
0.1
2.2
77.97
44

Associated Gene:

Gene:
BTG4
Ensembl Gene ID:
ENSAPLG00000008409
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008737
3610375 - 3611940
1566