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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3611606_3611763_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3611606 - 3611763
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AACATTTTAACT
Flanking Amino Acid:
TVSNPNSIYQFSDYCKPPMQ
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.2
33.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
77.5
0.62
0.9
76.9
37.3
Minor 5ss
38.7
-1.3
2.9
50.6
45.9
Minor BPS
63.8
0.51
1.3
71.65
39.4

Associated Gene:

Gene:
BTG4
Ensembl Gene ID:
ENSAPLG00000008409
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008737
3610375 - 3611940
1566