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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_25_3621607_3622156_R

Intron Information:

Intron Rank:
150737
Intron Class:
major
Intron Phase:
Intron Coordinates:
3621607 - 3622156
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAATATTC
5'SS Class:
major
3'SS Sequence:
TTTTATCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATAACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
71.6
32.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
91.2
0.93
0.7
89.2
27.3
Minor 5ss
44.3
-0.6
3.1
60.2
38.5
Minor BPS
48.1
-0.1
2.1
66.61
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028594
Chromosome:
25

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022475
3621391 - 3622836
1446